cloudy: t_mole_local Class Reference

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#include <mole.h>

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Public Member Functions
void	set_location (long nelem, long ion, double *dense)

void	set_isotope_abundances (void)

double	sink_rate_tot (const char chSpecies[]) const

double	sink_rate_tot (const molecule *const sp) const

double	sink_rate (const molecule *const sp, const mole_reaction &rate) const

double	sink_rate (const molecule *const sp, const char buf[]) const

double	source_rate_tot (const char chSpecies[]) const

double	source_rate_tot (const molecule *const sp) const

double	dissoc_rate (const char chSpecies[]) const

double	chem_heat (void) const

double	findrk (const char buf[]) const

double	findrate (const char buf[]) const

Data Fields
double	grain_area

double	grain_density

double	grain_saturation

double	elec

double **	source

double **	sink

realnum ***	xMoleChTrRate

valarray< class molezone >	species

vector< double >	reaction_rks

vector< double >	old_reaction_rks

long	old_zone

Detailed Description

Definition at line 369 of file mole.h.

Member Function Documentation

◆ chem_heat()

double t_mole_local::chem_heat ( void ) const

Definition at line 4115 of file mole_reactions.cpp.

References AVOGADRO, DEBUG_ENTRY, findspecies(), molecule::form_enthalpy, molecule::index, mole_reaction::index, ioQQQ, mole_reaction::label, mole_reaction::nproducts, mole_reaction::nreactants, nzone, mole_reaction::products, mole_priv::reactab, mole_reaction::reactants, reaction_rks, and mole_reaction::rvector.

Referenced by CoolEvaluate().

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◆ dissoc_rate()

double t_mole_local::dissoc_rate ( const char chSpecies[] ) const

returns the photodissociation rate per unit volume [cm^-3 s^-1] producing monatomic species chSpecies. Excludes photoionizations of other monatomic species, e.g. N-,PHOTON=>N,e-

returns the photodissociation rate per unit volume [cm^-3 s^-1] of species chSpecies

Definition at line 3999 of file mole_reactions.cpp.

References ASSERT, chSpecies, DEBUG_ENTRY, findspecies(), molecule::index, mole_reaction::index, molecule::isMonatomic(), molecule::nAtom, mole_reaction::nproducts, mole_reaction::nreactants, null_mole, mole_reaction::products, mole_priv::reactab, mole_reaction::reactants, and reaction_rks.

Referenced by lines_lv1_li_ne().

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◆ findrate()

double t_mole_local::findrate ( const char buf[] ) const

Definition at line 3900 of file mole_reactions.cpp.

References DEBUG_ENTRY, molecule::index, mole_reaction::index, mole_findrate_s(), mole_reaction::nreactants, mole_reaction::reactants, and reaction_rks.

Referenced by CoolOxyg(), lines_lv1_li_ne(), lines_molecules(), mole_effects(), and mole_h_rate_diagnostics().

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◆ findrk()

double t_mole_local::findrk ( const char buf[] ) const

Definition at line 3886 of file mole_reactions.cpp.

References ASSERT, DEBUG_ENTRY, mole_reaction::index, isnan, mole_findrate_s(), and reaction_rks.

Referenced by diatomics::mole_H2_form(), SaveDo(), and SetDeuteriumIonization().

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◆ set_isotope_abundances()

void t_mole_local::set_isotope_abundances ( void )

Definition at line 989 of file mole_species.cpp.

References DEBUG_ENTRY, and unresolved_atom_list.

Referenced by mole_update_species_cache(), and GroupMap::updateMolecules().

◆ set_location()

void t_mole_local::set_location	(	long	nelem,
		long	ion,
		double *	dense
	)

Definition at line 1018 of file mole_species.cpp.

References ASSERT, DEBUG_ENTRY, LIMELM, mole_global, t_mole_global::num_total, and unresolved_atom_list.

Referenced by InitSimPostparse().

◆ sink_rate() [1/2]

double t_mole_local::sink_rate	(	const molecule *const	sp,
		const char	buf[]
	)		const

Definition at line 3946 of file mole_reactions.cpp.

References mole_findrate_s(), and sink_rate().

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◆ sink_rate() [2/2]

double t_mole_local::sink_rate	(	const molecule *const	sp,
		const mole_reaction &	rate
	)		const

Definition at line 3952 of file mole_reactions.cpp.

References mole_reaction::a, DEBUG_ENTRY, molecule::index, mole_reaction::nreactants, mole_reaction::reactants, mole_reaction::rk(), mole_reaction::rvector, and mole_reaction::rvector_excit.

Referenced by sink_rate(), and sink_rate_tot().

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◆ sink_rate_tot() [1/2]

double t_mole_local::sink_rate_tot ( const char chSpecies[] ) const

Definition at line 3922 of file mole_reactions.cpp.

References chSpecies, DEBUG_ENTRY, findspecies(), and sink_rate_tot().

Referenced by diatomics::H2_X_sink_and_source(), mole_effects(), and sink_rate_tot().

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◆ sink_rate_tot() [2/2]

double t_mole_local::sink_rate_tot ( const molecule *const sp ) const

Definition at line 3931 of file mole_reactions.cpp.

References DEBUG_ENTRY, mole_priv::reactab, and sink_rate().

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◆ source_rate_tot() [1/2]

double t_mole_local::source_rate_tot ( const char chSpecies[] ) const

Definition at line 4076 of file mole_reactions.cpp.

References chSpecies, DEBUG_ENTRY, findspecies(), and source_rate_tot().

Referenced by diatomics::H2_X_sink_and_source(), mole_h_rate_diagnostics(), and source_rate_tot().

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◆ source_rate_tot() [2/2]

double t_mole_local::source_rate_tot ( const molecule *const sp ) const

Definition at line 4085 of file mole_reactions.cpp.

References mole_reaction::a, DEBUG_ENTRY, molecule::index, mole_reaction::nproducts, mole_reaction::nreactants, mole_reaction::products, mole_reaction::pvector, mole_reaction::pvector_excit, mole_priv::reactab, mole_reaction::reactants, and mole_reaction::rk().

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Field Documentation

◆ elec

double t_mole_local::elec

total charge in molecules

Definition at line 390 of file mole.h.

Referenced by ConvBase(), eden_sum(), mole_return_cached_species(), and t_mole_global::zero().

◆ grain_area

double t_mole_local::grain_area

Definition at line 387 of file mole.h.

Referenced by InitSimPostparse(), and mole_update_species_cache().

◆ grain_density

double t_mole_local::grain_density

Definition at line 387 of file mole.h.

Referenced by mole_update_species_cache().

◆ grain_saturation

double t_mole_local::grain_saturation

Definition at line 387 of file mole.h.

Referenced by mole_update_species_cache().

◆ old_reaction_rks

vector<double> t_mole_local::old_reaction_rks

Definition at line 401 of file mole.h.

Referenced by mole_rk_bigchange().

◆ old_zone

long t_mole_local::old_zone

Definition at line 402 of file mole.h.

Referenced by mole_create_react(), and mole_rk_bigchange().

◆ reaction_rks

vector<double> t_mole_local::reaction_rks

Definition at line 400 of file mole.h.

Referenced by chem_heat(), dissoc_rate(), findrate(), findrk(), mole_create_react(), mole_dominant_rates(), mole_eval_balance(), mole_eval_sources(), mole_print_species_reactions(), mole_punch(), mole_rk_bigchange(), and mole_update_rks().

◆ sink

double ** t_mole_local::sink

Definition at line 394 of file mole.h.

Referenced by fill_array(), find_solution(), HomogeneousSource(), iso_level(), IterRestart(), IterStart(), lgOH_ChargeTransferDominant(), mole_eval_sources(), mole_h_rate_diagnostics(), mole_solve(), PrintRates(), and zero().

◆ source

double** t_mole_local::source

these are source and sink terms for the ionization ladder, for chemical processes that remove and add species

Definition at line 394 of file mole.h.

Referenced by fill_array(), find_solution(), iso_level(), IterRestart(), IterStart(), mole_eval_sources(), mole_h_rate_diagnostics(), mole_solve(), PrintRates(), and zero().

◆ species

valarray<class molezone> t_mole_local::species

Definition at line 398 of file mole.h.

Referenced by AbundChange(), ChemImportance(), ConvBase(), ConvIterCheck(), CoolEvaluate(), DynaStartZone(), eden_sum(), findspecieslocal(), funjac(), diatomics::H2_LevelPops(), HeatSum(), diatomics::init(), t_mole_global::init(), iso_allocate(), iter_end_check(), IterRestart(), IterStart(), lgNetEdenSrcSmall(), lgNucleiConserved(), molcol(), mole_dominant_rates(), mole_effects(), mole_eval_balance(), mole_eval_dynamic_balance(), mole_eval_sources(), mole_h_fixup(), mole_h_rate_diagnostics(), mole_print_species_reactions(), mole_punch(), mole_return_cached_species(), mole_solve(), mole_update_limiting_reactants(), mole_update_species_cache(), OpacityAddTotal(), PrtColumns(), PrtComment(), PrtZone(), radius_increment(), radius_next(), RT_diffuse(), RT_tau_reset(), SaveDo(), SaveSpecies(), SaveSpeciesOne(), ScaleAllDensities(), GroupMap::setup(), states_nelemfill(), total_molecule_deut(), total_molecule_elems(), total_molecules(), total_molecules_gasphase(), total_network_elems(), GroupMap::updateMolecules(), and t_mole_global::zero().

◆ xMoleChTrRate

realnum*** t_mole_local::xMoleChTrRate

Definition at line 396 of file mole.h.

Referenced by fill_array(), iso_level(), IterRestart(), IterStart(), mole_eval_sources(), PrintRates(), and zero().

The documentation for this class was generated from the following files:

/home/iurt/rpmbuild/BUILD/c13.05/source/mole.h
/home/iurt/rpmbuild/BUILD/c13.05/source/mole_reactions.cpp
/home/iurt/rpmbuild/BUILD/c13.05/source/mole_species.cpp