species2.cpp File Reference

#include "cddefines.h"
#include "atmdat.h"
#include "phycon.h"
#include "taulines.h"
#include "mole.h"
#include "mole_priv.h"
#include "atoms.h"
#include "string.h"
#include "thirdparty.h"
#include "dense.h"
#include "conv.h"
#include "h2.h"
#include "physconst.h"
#include "secondaries.h"
#include "thermal.h"
#include "cooling.h"
#include "lines_service.h"

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Functions
STATIC double	LeidenCollRate (long, long, const TransitionProxy &, double)
STATIC double	StoutCollRate (long ipSpecies, long ipCollider, const TransitionProxy &, double ftemp)
STATIC double	ChiantiCollRate (long ipSpecies, long ipCollider, const TransitionProxy &, double ftemp)
void	dBase_solve (void)
double	CHIANTI_Upsilon (long ipSpecies, long ipCollider, long ipHi, long ipLo, double ftemp)

Variables
static const bool	DEBUGSTATE = false
static double *	g
static double *	ex
static double *	pops
static double *	depart
static double *	source
static double *	sink
static double **	AulEscp
static double **	col_str
static double **	AulDest
static double **	AulPump
static double **	CollRate

Function Documentation

CHIANTI_Upsilon()

double CHIANTI_Upsilon	(	long	ipSpecies,
		long	ipCollider,
		long	ipHi,
		long	ipLo,
		double	ftemp
	)

CHIANTI_Upsilon converts Chianti collision splines to collision strengths

Definition at line 690 of file species2.cpp.

References ASSERT, AtmolCollSplines, t_CollSplinesArray::collspline, dBaseSpecies, DEBUG_ENTRY, DEBUGSTATE, t_CollSplinesArray::EnergyDiff, t_CollSplinesArray::intTranType, ioQQQ, linint(), t_CollSplinesArray::nSplinePts, t_CollSplinesArray::ScalingParam, t_CollSplinesArray::SplineSecDer, and TotalInsanity().

Referenced by ChiantiCollRate(), and SaveDo().

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ChiantiCollRate()

STATIC double ChiantiCollRate	(	long	ipSpecies,
		long	ipCollider,
		const TransitionProxy &	tr,
		double	ftemp
	)

Definition at line 664 of file species2.cpp.

References AtmolCollSplines, CHIANTI_Upsilon(), COLL_CONST, DEBUG_ENTRY, TransitionProxy::Hi(), t_CollSplinesArray::intTranType, ipELECTRON, TransitionProxy::ipHi(), TransitionProxy::ipLo(), and ipPROTON.

Referenced by dBase_solve().

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dBase_solve()

void dBase_solve

(

void

)

Todo:

0 this pointer should be cached one time, and the species removed from the list if it is not computed

Definition at line 33 of file species2.cpp.

References abund, ASSERT, atmdat, AtmolCollRateCoeff, atom_levelN(), AulDest, AulEscp, AulPump, cdEXIT, ChiantiCollRate(), t_species::chLabel, CollisionProxy::col_str(), col_str, COLL_CONST, colliders, CollisionZero(), CollRate, t_atmdat::collstrDefault, conv, CoolAdd(), t_species::CoolTotal, dBaseSpecies, dBaseStates, dBaseTrans, t_thermal::dCooldT, DEBUG_ENTRY, molezone::den, dense, depart, dsexp(), t_thermal::elementcool, EmLineZero(), TransitionProxy::EnergyWN(), ex, EXIT_FAILURE, Fe3_cs(), Fe4_cs(), Fe5_cs(), findspecieslocal(), t_species::fracIsotopologue, t_species::fracType, g, t_thermal::heating, ioQQQ, ipATOM_H, ipATOM_HE, ipELECTRON, ipH2, ipH2_ORTHO, ipH2_PARA, ipH2p, ipH_LIKE, ipHE_PLUS, ipHYDROGEN, ipNCOLLIDER, ipPROTON, iso_sp, LeidenCollRate(), t_species::lgActive, t_atmdat::lgGbarOn, t_conv::lgSearch, LIMELM, MakeCS(), MALLOC, max(), MAX2, MIN2, nSpecies, t_conv::nTotalIoniz, null_molezone, t_species::numLevels_local, t_species::numLevels_max, phycon, pops, CollisionProxy::rate_coef_ul(), CollisionProxy::rate_coef_ul_set(), secondaries, sink, SMALLFLOAT, source, t_phycon::sqrte, StoutCollRate(), t_phycon::te, thermal, TotalInsanity(), t_iso_sp::trans(), t_secondaries::x12tot, t_dense::xIonDense, and t_dense::xNucleiTotal.

Referenced by CoolEvaluate().

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LeidenCollRate()

STATIC double LeidenCollRate	(	long	ipSpecies,
		long	ipCollider,
		const TransitionProxy &	tr,
		double	ftemp
	)

Definition at line 599 of file species2.cpp.

References AtmolCollRateCoeff, DEBUG_ENTRY, InterpCollRate(), TransitionProxy::ipHi(), and TransitionProxy::ipLo().

Referenced by dBase_solve().

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StoutCollRate()

STATIC double StoutCollRate	(	long	ipSpecies,
		long	ipCollider,
		const TransitionProxy &	tr,
		double	ftemp
	)

Definition at line 607 of file species2.cpp.

References ASSERT, COLL_CONST, t_StoutColls::collstrs, DEBUG_ENTRY, TransitionProxy::Hi(), TransitionProxy::ipHi(), TransitionProxy::ipLo(), t_StoutColls::lgIsRate, linint(), MALLOC, t_StoutColls::ntemps, StoutCollData, and t_StoutColls::temps.

Referenced by dBase_solve().

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Variable Documentation

AulDest

double ** AulDest

static

Definition at line 29 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe3Lev14(), and Fe4Lev12().

AulEscp

double** AulEscp

static

Definition at line 29 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe4Lev12(), and PutLine_base().

AulPump

double ** AulPump

static

Definition at line 29 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe3Lev14(), and Fe4Lev12().

col_str

double ** col_str

static

Definition at line 29 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe3_cs(), Fe3Lev14(), Fe4Lev12(), Fe5_cs(), FeIICollRatesBoltzmann(), H21_cm_pops(), hydro_vs_deexcit(), my_Integrand_VF01_E::operator()(), and my_Integrand_S62::operator()().

CollRate

double ** CollRate

static

Definition at line 29 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe3Lev14(), Fe4Lev12(), and diatomics::H2_X_coll_rate_evaluate().

DEBUGSTATE

const bool DEBUGSTATE = false

static

Definition at line 26 of file species2.cpp.

Referenced by CHIANTI_Upsilon().

depart

double * depart

static

Definition at line 28 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe3Lev14(), and Fe4Lev12().

ex

double * ex

static

Definition at line 28 of file species2.cpp.

Referenced by atom_levelN(), atom_pop3(), dBase_solve(), Fe2_cooling(), gbar0(), gbar1(), t_ADfA::hpfit(), iso_cascade(), iso_error_generation(), iso_radiative_recomb_effective(), lines_hydro(), PrtHydroTrace1(), and RT_line_all().

g

double* g

static

Definition at line 28 of file species2.cpp.

Referenced by multi_arr< T, d, ALLOC, lgBC >::alloc(), atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_readin(), atmdat_STOUT_readin(), atom_level2(), atom_level3(), atom_levelN(), atom_pop5(), AtomSeqBoron(), ColStrGBar(), ContCreatePointers(), CoolCarb(), CoolIron(), CoolNick(), CoolNitr(), CoolOxyg(), CoolSili(), CoolSulf(), dBase_solve(), DoFSMixing(), FeIICollRatesBoltzmann(), FeIICreate(), FeIILevelPops(), FeIILyaPump(), FeIIPoint(), FeIIPunchColden(), FeIIPunchLevels(), FillExtraLymanLine(), GammaBn(), gbar0(), gbar1(), H21_cm_pops(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_PunchDo(), diatomics::H2_zero_pops_too_low(), Hion_coll_ioniz_ratecoef(), HydroCSInterp(), HydroRecCool(), HyperfineCreate(), diatomics::init(), iso_create(), iso_level(), iso_satellite(), iso_satellite_update(), LineConvRate2CS(), lines_setup(), mie_cs_size_distr(), multi_arr< T, d, ALLOC, lgBC >::multi_arr(), OccupationNumberLine(), oi_level_pops(), multi_arr< T, d, ALLOC, lgBC >::p_setupArray(), PressureRadiationLine(), PrtHydroTrace1(), radius_first(), ReadBadnellAIData(), RT_line_pumping(), Save1LineData(), SaveGaunts(), scqdri(), diatomics::SolveExcitedElectronicLevels(), diatomics::SolveSomeGroundElectronicLevels(), states_propprint(), and TexcLine().

pops

double * pops

static

Definition at line 28 of file species2.cpp.

Referenced by atom_levelN(), AtomSeqBoron(), dBase_solve(), Fe2_cooling(), Fe3Lev14(), and Fe4Lev12().

sink

double * sink

static

Definition at line 28 of file species2.cpp.

Referenced by atom_levelN(), dBase_solve(), fill_array(), and iso_level().

source

double * source

static

Definition at line 28 of file species2.cpp.

Referenced by append_file(), atom_levelN(), dBase_solve(), fill_array(), find_solution(), HomogeneousSource(), ion_solver(), iso_level(), mole_create_react(), mole_eval_dynamic_balance(), newreact(), PrintRates(), and store_new_densities().